Bioinformatics
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Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning
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gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes
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PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata
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Omada: Robust clustering of transcriptomes through multiple testing
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Structure-aware protein sequence alignment using contrastive learning
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Protein Set Transformer: A protein-based genome language model to power high diversity viromics
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Autoprot: Processing, Analysis and Visualization of Proteomics Data in Python
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GenomeDelta: detecting recent transposable element invasions without repeat library
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Limitations of Current Machine-Learning Models in Predicting Enzymatic Functions for Uncharacterized Proteins
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Exploring the accuracy of ab initio prediction methods for viral pseudoknotted RNA structures
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