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MerQuaCo: a computational tool for quality control in image-based spatial transcriptomics

This article's authors
1. Naomi Martin
2. Paul Olsen
3. Jacob Quon
4. Jazmin Campos
5. Nasmil Valera Cuevas
6. Josh Nagra
7. Marshall VanNess
8. Zoe Maltzer
9. Emily C Gelfand
10. Alana Oyama
11. Amanda Gary
12. Yimin Wang
13. Angela Alaya
14. Augustin Ruiz
15. Cade Reynoldson
16. Cameron Bielstein
17. Christina Alice Pom
18. Cindy Huang
19. Cliff Slaughterbeck
20. Elizabeth Liang
21. Jason Alexander
22. Jeanelle Ariza
23. Jocelin Malone
24. Jose Melchor
25. Kaity Colbert
26. Krissy Brouner
27. Lyudmila Shulga
28. Melissa Reding
29. Patrick Latimer
30. Raymond Sanchez
31. Stuard Barta
32. Tom Egdorf
33. Zachary Madigan
34. Chelsea M Pagan
35. Jennie L Close
36. Brian Long
37. Michael Kunst
38. Ed S Lein
39. Hongkui Zeng
40. Delissa McMillen
41. Jack Waters
This article has 8 evaluations Latest evaluation on Oct 9, 2025 Published on Jul 14, 2025
A network regularized linear model to infer spatial expression pattern for single cell

This article's authors
1. Chaohao Gu
2. Hu Chen
3. Zhandong Liu
This article has 10 evaluations Latest evaluation on Oct 10, 2025 Published on Oct 13, 2025
Chevreul: An R Bioconductor Package for Exploratory Analysis of Full-Length Single Cell Sequencing

This article's authors
1. Kevin Stachelek
2. Bhavana Bhat
3. David Cobrinik
This article has 2 evaluations Latest evaluation on Jul 30, 2025 Published on Jun 1, 2025
MuSpAn: A Toolbox for Multiscale Spatial Analysis

This article's authors
1. Joshua A. Bull
2. Joshua W. Moore
3. Shania M. Corry
4. Muyang Lin
5. Hayley L. Belnoue-Davis
6. Eoghan J. Mulholland-Illingworth
7. Simon J. Leedham
8. Helen M. Byrne
This article has 1 evaluations Latest evaluation on Feb 7, 2025 Published on Sep 24, 2025
CellPhePy: a Python implementation of the CellPhe toolkit for automated cell phenotyping from microscopy time-lapse videos

This article's authors
1. Laura Wiggins
2. Stuart Lacy
3. Graeme Park
4. Joanne Marrison
5. Ben Powell
6. Beth Cimini
7. Peter O’Toole
8. Julie Wilson
9. William J. Brackenbury
This article has 2 evaluations Latest evaluation on Apr 30, 2025 Published on Jan 8, 2025
Sequenoscope: A Modular Tool for Nanopore Adaptive Sequencing Analytics and Beyond

This article's authors
1. Abdallah Meknas
2. Kyrylo Bessonov
3. Shannon H.C. Eagle
4. Christy-Lynn Peterson
5. James Robertson
6. Nicole Ricker
7. Tara Signorelli
8. John Nash
9. Aleisha Reimer
This article has 4 evaluations Latest evaluation on Aug 28, 2025 Published on May 30, 2025
Discovery of Expression-Governing Residues in Proteins

This article's authors
1. Fan Jiang
2. Mingchen Li
3. Banghao Wu
4. Liang Zhang
5. Bozitao Zhong
6. Yuanxi Yu
7. Liang Hong
This article has 1 evaluations Latest evaluation on Feb 7, 2025 Published on Jan 7, 2025
Benchmarking Long-read Sequencing Tools for Chromosome End-specific Telomere Analysis

This article's authors
1. Jake Reed
2. Mark Oelkuct
3. Kevin Coombes
This article has 1 evaluations Latest evaluation on Mar 28, 2025 Published on Mar 6, 2025
Uncovering Developmental Lineages from Single-cell Data with Contrastive Poincaré Maps

This article's authors
1. Nithya Bhasker
2. Hattie Chung
3. Louis Boucherie
4. Vladislav Kim
5. Stefanie Speidel
6. Melanie Weber
This article has 4 evaluations Latest evaluation on Sep 4, 2025 Published on Sep 16, 2025
Massively parallel reporter assay for mapping gene-specific regulatory regions at single nucleotide resolution

This article's authors
1. Alastair J Tulloch
2. Ryan N Delgado
3. Rinaldo Catta-Preta
4. Constance L Cepko
This article has 5 evaluations Latest evaluation on Jul 29, 2025 Published on May 14, 2025

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